KhodezaBegum
commented
2 years ago Following, I have the same issue.
Open GayatriNavle opened 2 years ago
KhodezaBegum
commented
2 years ago Following, I have the same issue.
zero555666
commented
2 years ago Following, I have the same issue.
zero555666
commented
2 years ago how to solve it ???
yoavatsmonraz
commented
2 years ago i also have it
syy197
commented
8 months ago pip install --upgrade tape-proteins
Generating TAPE features 243B [00:00, 284458.80B/s] Traceback (most recent call last): File "/home/ngayatri/trRosetta2/trRosetta2/tape/get_embeddings.py", line 25, in
model = ProteinBertModel.from_pretrained('bert-base')
File "/home/ngayatri/miniconda3/envs/casp14-baker/lib/python3.6/site-packages/tape/models/modeling_utils.py", line 470, in from_pretrained
*kwargs
File "/home/ngayatri/miniconda3/envs/casp14-baker/lib/python3.6/site-packages/tape/models/modeling_utils.py", line 172, in from_pretrained
config = cls.from_json_file(resolved_config_file)
File "/home/ngayatri/miniconda3/envs/casp14-baker/lib/python3.6/site-packages/tape/models/modeling_utils.py", line 202, in from_json_file
return cls.from_dict(json.loads(text))
File "/home/ngayatri/miniconda3/envs/casp14-baker/lib/python3.6/json/init.py", line 354, in loads
return _default_decoder.decode(s)
File "/home/ngayatri/miniconda3/envs/casp14-baker/lib/python3.6/json/decoder.py", line 339, in decode
obj, end = self.raw_decode(s, idx=_w(s, 0).end())
File "/home/ngayatri/miniconda3/envs/casp14-baker/lib/python3.6/json/decoder.py", line 357, in raw_decode
raise JSONDecodeError("Expecting value", s, err.value) from None
json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
Running sequence-based trRosetta
Folding trRosetta models
Running trRefine
/home/ngayatri/trRosetta2/trRosetta2
Folding trRefine models
ls: cannot access /home/ngayatri/trRosetta2/trRosetta2/example/T1078/pdb-trRefine/model.pdb: No such file or directory
Running DeepAccNet-msa on trRefine models
please help me solve this issue