Roshan1992 / RedeFISH

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Singular matrix warning & supplying cell center coordinates #1

Open pakiessling opened 1 year ago

pakiessling commented 1 year ago

Thank you for the tools. Excited to try it out!

Two questions:

After every run I get the warning WARNING:root:Singular matrix. Likely caused by all points lying in an N-1 space. what does this mean?

Secondly, I already have cell center locations in a dataframe. Should I supply them like this?

estimated_cell_locations = np.asarray([metadata["center_x"], metadata["center_y"]]).T

Thanks!