Rostlab LocText issues - Githubissues

Rostlab / LocText

Relation Extraction (RE) of: Proteins <--> Cell Compartments

https://www.tagtog.net/-corpora/LocText

Apache License 2.0

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Bump certifi from 2017.7.27.1 to 2022.12.7

#50 dependabot[bot] opened 1 year ago
0
Bump ujson from 1.35 to 5.4.0

#49 dependabot[bot] opened 2 years ago
0
Bump numpy from 1.11.2 to 1.22.0

#48 dependabot[bot] opened 2 years ago
0
Bump numpy from 1.11.2 to 1.21.0

#47 dependabot[bot] closed 2 years ago
1
Bump ujson from 1.35 to 5.2.0

#46 dependabot[bot] closed 2 years ago
1
Bump nltk from 3.2.1 to 3.6.3

#45 dependabot[bot] opened 3 years ago
0
Bump urllib3 from 1.24.1 to 1.26.5

#44 dependabot[bot] opened 3 years ago
0
Bump py from 1.4.34 to 1.10.0

#43 dependabot[bot] opened 3 years ago
0
Bump nltk from 3.2.1 to 3.4.5

#42 dependabot[bot] closed 3 years ago
1
BINF-D-17-00305R2

#41 juanmirocks opened 6 years ago
0
LocText throws error

#40 dedmari closed 7 years ago
1
Address review: BINF-D-17-00305-R1

#39 juanmirocks closed 7 years ago
0
‼️ Calculate ner - performance differences in LocText branches (develop, feature/speed_up_relation_pipeline)

#38 MadhukarSP closed 7 years ago
4
‼️Calculate ner performance of StringTagger

#37 juanmirocks closed 7 years ago
4
‼️ Compare against LocTree results

#36 juanmirocks closed 7 years ago
2
Query UniProt programmatically to get info

#35 juanmirocks closed 7 years ago
1
Explore Different Sentece Models and achieve F1 > 80

#34 juanmirocks opened 7 years ago
0
Cellular Components that are also Molecular Functions

#33 juanmirocks closed 7 years ago
1
‼️Assess performance against PubMed documents

#32 juanmirocks closed 7 years ago
11
State-Of-The-Art in RE -- Reading Material

#31 juanmirocks closed 7 years ago
1
‼️Try other ml classifiers

#30 juanmirocks closed 7 years ago
0
Use spacy sentence splitter

#29 juanmirocks opened 7 years ago
0
Easy-fix wrong spacy multiple roots

#28 juanmirocks opened 7 years ago
0
‼️Fill in missing normalizations in interFile_modified.tsv file

#27 juanmirocks closed 7 years ago
23
Review choice of Tokenizer

#26 juanmirocks opened 7 years ago
1
Update annotations in tagtog & PubAnnotation

#25 juanmirocks opened 7 years ago
0
Count number of relations in relna/LocText corpus

#24 MadhukarSP closed 7 years ago
1
‼️Create STRING tagger Docker with dics & uniprot ids mapping

#23 juanmirocks closed 7 years ago
17
‼️Prepare data for final manual evaluation

#22 juanmirocks closed 7 years ago
4
‼️ 📚 Reading Material

#21 juanmirocks closed 7 years ago
3
‼️ Implement general evaluator

#20 juanmirocks closed 7 years ago
2
‼️ Impl. Converter from STRING id to UniProt ID

#19 juanmirocks closed 7 years ago
7
Figure out how to print & submit PhD Thesis

#18 juanmirocks closed 7 years ago
1
Profile code to speed it up

#17 juanmirocks closed 7 years ago
3
‼️ Do feature selection with IG (Information Gain) and Avg

#16 juanmirocks closed 7 years ago
3
Cross-run relna & Loctext against their respective corpora

#15 juanmirocks closed 7 years ago
1
Run original java code to check balance of pos. vs neg. instances

#14 juanmirocks closed 7 years ago
1
Too many parsers

#13 juanmirocks closed 7 years ago
2
Verify whether to use SVMLight TK or not

#12 juanmirocks closed 8 years ago
2
‼️Crush the Baseline

#11 juanmirocks closed 7 years ago
19
Verify Possible Difference in Tokenization & Sentence Splitting

#10 MadhukarSP closed 8 years ago
2
Write paper

#9 juanmirocks closed 7 years ago
3
‼️ Write STRINGTagger in python LocText code

#8 juanmirocks closed 7 years ago
3
At the end, train on whole LocText corpus

#7 juanmirocks closed 7 years ago
1
‼️ Convert DS model

#6 juanmirocks closed 7 years ago
2
Implement original LocText features

#5 juanmirocks closed 7 years ago
5
Create tagger using nalaf

#4 juanmirocks closed 8 years ago
1
General Issue (email to collaborators)

#3 juanmirocks closed 8 years ago
1
‼️ Put normalizations written in PubAnnotation format back to tagtog

#2 juanmirocks closed 7 years ago
6
Put normalizations written in PubAnnotation format back to tagtog

#1 juanmirocks closed 8 years ago
1