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Rostlab / nala

Text mining of natural language mutations mentions
https://www.tagtog.net/-corpora/IDP4+
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Investigate if PMD can be useful for us #19

Open juanmirocks opened 8 years ago

juanmirocks commented 8 years ago

http://pmd.ddbj.nig.ac.jp/~pmd/pmd.html

carstenuhlig commented 8 years ago

Goal would be to retrieve a list of pmids that would be relevant for use, containing information gaining nl mentions. We can find such a list by specifying keywords to supply for the search... maybe go for the 1000 most used proteins... Next we need to extract the pmids that are associated with the mutant. Meaning for investigation we just read manually a few abstracts. When this is positive we need to implement an interface to this website.