No module named xalglib

[GoogleCodeExporter]

What steps will reproduce the problem?
/usr/local/bin/jsm.py
Traceback (most recent call last):
  File "/usr/local/bin/jsm.py", line 9, in <module>
    from joint_snv_mix.run import classify, train 
  File "run.pyx", line 17, in init joint_snv_mix.run (joint_snv_mix/run.c:5082)
  File "/usr/local/lib/python2.7/dist-packages/joint_snv_mix/post_processing/post_processor.py", line 9, in <module>
    import xalglib
ImportError: No module named xalglib

So where does xalglib come from?  easy_install doesn't know anything about it.

What version of the product are you using? On what operating system?
JointSNVMix-0.8-b2
Debian x86_64 wheezy (python2.7)

Original issue reported on code.google.com by john.bro...@gmail.com on 22 Jun 2012 at 11:38

[GoogleCodeExporter]

Solved (sort of) - I subsequently installed the 0.7.5 version and this error is 
not seen.
John

Original comment by john.bro...@gmail.com on 22 Jun 2012 at 12:57

[GoogleCodeExporter]

Hi,
I have the same issue: 

/tools/BioUML$ jsm.py classify
Traceback (most recent call last):
  File "/usr/local/bin/jsm.py", line 9, in <module>
    from joint_snv_mix.run import classify, train 
  File "run.pyx", line 17, in init joint_snv_mix.run (joint_snv_mix/run.c:5082)
  File "/usr/local/lib/python2.7/dist-packages/joint_snv_mix/post_processing/post_processor.py", line 9, in <module>
    import xalglib
ImportError: No module named xalglib

System: $ uname -a
Linux s0 3.2.0-25-generic #40-Ubuntu SMP Wed May 23 20:30:51 UTC 2012 x86_64 
x86_64 x86_64 GNU/Linux

Ubuntu 12.04

python 2.7.3:

$ dpkg -s python
Package: python
Status: install ok installed
Priority: important
Section: python
Installed-Size: 658
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Architecture: amd64
Source: python-defaults
Version: 2.7.3-0ubuntu2
Replaces: python-dev (<< 2.6.5-2)
Provides: python-ctypes, python-email, python-importlib, python-profiler, 
python-wsgiref
Depends: python2.7 (>= 2.7.3), python-minimal (= 2.7.3-0ubuntu2)
Suggests: python-doc (= 2.7.3-0ubuntu2), python-tk (= 2.7.3-0ubuntu2)
Breaks: python-bz2 (<< 1.1-8), python-csv (<< 1.0-4), python-email (<< 
2.5.5-3), update-manager-core (<< 0.200.5-2)
Conflicts: python-central (<< 0.5.5)
Description: interactive high-level object-oriented language (default version)
 Python, the high-level, interactive object oriented language,
 includes an extensive class library with lots of goodies for
 network programming, system administration, sounds and graphics.
 .
 This package is a dependency package, which depends on Debian's default
 Python version (currently v2.7).
Homepage: http://www.python.org/
Original-Maintainer: Matthias Klose <doko@debian.org>

JointSNVMix-0.8 (b2) version

Thanks

Original comment by mik...@gmail.com on 24 Jun 2012 at 1:59

[GoogleCodeExporter]

Installing the Python bindings for Alglib will fix this. See the user group 
posting announcing the beta release 
http://groups.google.com/group/jointsnvmix-user-group/browse_thread/thread/97b29
886daa3f6f9 for information about 0.8-b2.

Original comment by AndrewJL...@gmail.com on 25 Jun 2012 at 7:54

• Changed state: Done