search

Roth-Lab / JointSNVMix

Automatically exported from code.google.com/p/joint-snv-mix
1 stars 1 forks source link

ConfigParser.NoSectionError while running classify joint_snv_mix_two #23

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1. Run "classify joint_snv_mix_two" on some of my data. 

What is the expected output? What do you see instead?
I expect to see the output file. 

What version of the product are you using? On what operating system?
JointSNVMix 0.7.5, the feature version, running on Debian 7.2, with Python 2.7.3

Please provide any additional information below.
Error message:
Traceback (most recent call last):
  File "/net/kodiak/volumes/lake/shared/opt/JointSNVMix-0.7.5/build/scripts-2.7/jsm.py", line 224, in <module>
    args.func(args)
  File "/home/ltfang/.local/lib/python2.7/site-packages/joint_snv_mix/runners/classify.py", line 66, in joint_snv_mix_two_classify
    params.read_from_file(args.parameter_file_name)
  File "joint_snv_mix.pyx", line 299, in joint_snv_mix.trainers.joint_snv_mix.JointSnvMixParameters.read_from_file (joint_snv_mix/trainers/joint_snv_mix.c:6699)
  File "/usr/lib/python2.7/ConfigParser.py", line 607, in get
    raise NoSectionError(section)
ConfigParser.NoSectionError: No section: 'mu_N'

Original issue reported on code.google.com by thecalb...@gmail.com on 6 Apr 2014 at 2:00