--init_method connected not present

Roth-Lab / pyclone

Probabilistic model for inferring clonal population structure from deep NGS sequencing.

https://bitbucket.org/aroth85/pyclone/wiki/Home

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--init_method connected not present #10

Closed rschenck closed 5 years ago

rschenck commented 5 years ago

The --init_method connected does not appear to be present in v0.13.1. Is that accurate? I receive an error for some other tools based on the lack of this in PyClone.

mmyers1 commented 5 years ago

If you are running PyClone on Mac and you installed it using Anaconda, you may only have version 0.13.0 (the latest OS X release available there), which does not have this option. You'll have to build PyClone from source, i.e., clone the repo and install manually.

rschenck commented 5 years ago

Indeed. It is only v0.13.0! Cheers