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Roth-Lab / pyclone

Probabilistic model for inferring clonal population structure from deep NGS sequencing.
https://bitbucket.org/aroth85/pyclone/wiki/Home
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major/minor copy number must be integer? #21

Closed TnakaNY closed 3 years ago

TnakaNY commented 3 years ago

Some copy number caller provide non-integer copy number. Does PyClone accept floating value for copy number?

aroth85 commented 3 years ago

No PyClone does not. Non-integer copy number would not work with the way the model is setup. The common solutions are to use an integer caller or round the values to integers.

TnakaNY commented 3 years ago

Thanks for comments. I will round it up in R.