search

Rothamsted / knetbuilder

KnetBuilder data integration platform for building knowledge graphs. Previously known as ondex.
https://knetminer.com
MIT License
12 stars 11 forks source link

Only parse UniProt data containing a specific keyword within Publications #22

Closed josephhearnshaw closed 3 years ago

josephhearnshaw commented 5 years ago

It would be good to enable a way to filter the OXL data directly based upon a search term being present within a Publication; this would create more concise and relevant knowledge-networks.

i.e. Searching for Alzheimer's to create a more Alzheimer's specific OXL for Human. Or a search term for more specific plant datasets. This may be useful for certain diseases in both Animals & Plants, respectively.

Can be expanded to include 'AND', 'OR', 'AND+' statements.

marco-brandizi commented 3 years ago

Filtering a particular import based on another particular import is too specific to be good. This might be a better approach: a filter plug-in having methods like boolean filterConcept( concept ) and boolean filterRelation( relation ), which would allow for deciding what concepts to retain one-by-one, based on criteria like being related to a publication with certain keywords.

Possibly, this could have a subclass that accepts groovy files as implementations of the two filtering methods.

KeywanHP commented 3 years ago

Agree this is too specific. There are other ways of achieving this.