Rothamsted / knetminer

KnetMiner - webapp to search and visualize genome-scale knowledge graphs
https://knetminer.com
MIT License
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Evidence node not shown in the initial Network View #291

Closed KeywanHP closed 2 years ago

KeywanHP commented 6 years ago

Spotted an issue where a node that contains the search term in its attribute is not shown. A possible reason could be that the attribute is not indexed by Lucene.

The concept-name is: Storage 56 days The attribute-name is: Study

Can be replicated on Arabidopsis or Wheat KnetMiner: Keyword: germination Gene List: MFT

The visualized network for MFT is missing the highlighted paths.

image

Following search shows the path: Keyword: germination OR storage Gene List: MFT

Conclusion: concept-name is OK; something wrong with concept-attribute.

@marco-brandizi please check if the "Indexed flag" is set to true for that specific node-attribute.

marco-brandizi commented 2 years ago

@KeywanHP is this still relevant? Problem hasn't changed, "Storage 56 days" doesn't yield any result. I don't think we should mess-up with attributes around and add them up freely. We should try to harmonise things instead, that is:

KeywanHP commented 2 years ago

The data and data model has changed and I can find keywords matching study attributes in KnetMiner.