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Rothamsted / knetminer

KnetMiner - webapp to search and visualize genome-scale knowledge graphs
https://knetminer.com
MIT License
25 stars 16 forks source link

View overlap / merge genes linked to a trait/GO etc. to make a unique list i.e. 'Select Distinct'. (Feature request) #568

Open speromelior opened 3 years ago

speromelior commented 3 years ago

The evidence tab lists genes constellated around a trait or GO term, it would be good to be able to pick terms (e.g. 'plant hypersensitive response', 'Stress-activated MAPK Cascade', 'Response to fungus' ) and see which are common to all (maybe an Upset plot https://jku-vds-lab.at/tools/upset/ would work well here). Being able to output all genes linked to a series of terms or just the common ones would be desirable outcome from this analysis

KeywanHP commented 3 years ago

There will be a way to achieve this in release 5 using an iterative search approach. the evidence terms identified in the first search can be added as keywords using the "+" button, a second search can then be performed. The Gene View will list all genes linked to a series of terms and the list can be downloaded. It's not be the most intuitive solution, so it would need documentation. Please test and feedback.