Rothamsted / knetminer

KnetMiner - webapp to search and visualize genome-scale knowledge graphs
https://knetminer.com
MIT License
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Enhance Evidence View with Species-specific Toggle #756

Closed Arnedeklerk closed 1 year ago

Arnedeklerk commented 1 year ago

The current evidence view provides a overview of evidence across the entire knowledge graph. While this can be beneficial for certain users who require a broader perspective encompassing multiple species, it may not be ideal for most users who primarily focus on information relevant to their selected species. To address this, we propose introducing a toggle to the evidence view that allows users to choose between viewing evidence for all species or limiting it to their currently selected species.

  1. Add a toggle button in the evidence view interface to enable users to switch between all species and the currently selected species.
  2. Modify the P-value formula to consider only the selected species. This adjustment will require consultation with a statistician, such as David, to fine-tune the formula.
  3. Update the genes exporter functionality to display and export species-specific totals.
  4. Adjust the genes exporter to export gene information based on the selected species, ensuring that only relevant data is included in the exported file.

I recall that this is not a very quick fix, as Marco mentioned needing to make significant changes to the backend too, so this ticket still needs to be added to.

Arnedeklerk commented 1 year ago

Combined with similar ticket and migrated: https://github.com/KnetMiner/knetminer/issues/11