Open poflawless opened 3 years ago
Hello ,
I am trying to use grinch to define TAD structures,
whereas after I use the following command line: grinch sample_10000.matrix sample_10000_abs.bed -o path/TAD/sample_10000 -e 100000
the error shows like this:
gsl: init_source.c:40: ERROR: failed to allocate space for block data Default GSL error handler invoked. Aborted
I used the matrix and bed file from hicPro, which lists all the chr bed and matrix, also has the issue that the index start from 1 but not 0,
Do you have any suggestions to get the input matrix and bed after I use hicPro??
Best Wishes
Hello ,
I am trying to use grinch to define TAD structures,
whereas after I use the following command line: grinch sample_10000.matrix sample_10000_abs.bed -o path/TAD/sample_10000 -e 100000
the error shows like this:
gsl: init_source.c:40: ERROR: failed to allocate space for block data Default GSL error handler invoked. Aborted
I used the matrix and bed file from hicPro, which lists all the chr bed and matrix, also has the issue that the index start from 1 but not 0,
Do you have any suggestions to get the input matrix and bed after I use hicPro??
Best Wishes