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RudolfCardinal / pythonlib

Miscellaneous Python support functions
Apache License 2.0
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The docs don't build with numpy 2.0 #21

Open martinburchell opened 2 months ago

martinburchell commented 2 months ago

I pinned NumPy to <2.0 in d56e383132727b1ce536ab7a217aad358ec2d984 because of this error when building the docs:


Warning, treated as error:
autodoc: failed to import module 'treatment_resistant_depression' from module 'cardinal_pythonlib.psychiatry'; the following exception was raised:
cannot import name 'NaN' from 'numpy' (/home/runner/venv/lib/python3.10/site-packages/numpy/__init__.py)
make: *** [Makefile:20: html] Error 2
The name of the builder is: htmlDeleting directory '/home/runner/work/pythonlib/pythonlib/docs/build/html'
Making HTML version of documentation
Traceback (most recent call last):
  File "/home/runner/work/pythonlib/pythonlib/docs/./rebuild_docs.py", line 62, in <module>
    subprocess.check_call(cmdargs)
  File "/usr/lib/python3.10/subprocess.py", line 369, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['make', 'html', 'SPHINXOPTS="-W"']' returned non-zero exit status 2.
RudolfCardinal commented 2 months ago

Was going to update, but numpy==2.0.0 is quite new and not yet supported by scipy (https://docs.scipy.org/doc/scipy/dev/toolchain.html). Not sure about numba. When the time comes, helpful guide at https://numpy.org/devdocs/numpy_2_0_migration_guide.html.