Automatically generate network code fix

RuleWorld / bionetgen

Rule-based modeling framework

https://bionetgen.org/

MIT License

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Automatically generate network code fix #195

Closed sag134 closed 6 years ago

sag134 commented 6 years ago

Enabling automatic network generation if the methods are ODE/SSA/PLA. If there is a call to simulate using one of those methods, and the size of the reaction list is 0 (network hasn't been generated), call generate_network. Also works for parameter scans.

jrfaeder commented 6 years ago

The code passes validation tests but there were are some unrelated and lingering build issues. These seem to be coming from failures in the appveyor script having to do with downloading pre-build NFsim and Atomizer binaries. The build process needs to be updated.