The parameter_scan action in bngl does not currently check whether the parameter that is being scanned is defined. The attached example shows that scanning an undefined parameter still results in the full set of simulations being run and they each produce the same result.
begin parameters
ke1 0.3
k_e1 0.3
end parameters
begin species
A() 10
end species
begin observables
Molecules B B()
end observables
begin reaction rules
A() <-> B() ke1,k_e1
end reaction rules
#simulate({method=>"ode",t_end=>10,n_steps=>200})
# Scan valid parameter
parameter_scan({method=>"ode",t_start=>0,t_end=>1e7,\
n_steps=>10,parameter=>"ke1",par_min=>1e-2,par_max=>1e2,n_scan_pts=>20,log_scale=>1})
# Scan invalid parameter
parameter_scan({method=>"ode",t_start=>0,t_end=>1e7,\
n_steps=>10,parameter=>"ke2",par_min=>1e-2,par_max=>1e2,n_scan_pts=>20,log_scale=>1})
The
parameter_scanaction in bngl does not currently check whether the parameter that is being scanned is defined. The attached example shows that scanning an undefined parameter still results in the full set of simulations being run and they each produce the same result.