Missing a bracket in output json file

RuleWorld / nfsim

A general-purpose, stochastic, biochemical reaction simulator for large reaction networks

http://michaelsneddon.net/nfsim/

MIT License

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Missing a bracket in output json file #40

Open kychen37 opened 5 months ago

kychen37 commented 5 months ago

Hello, In the output json file that includes the firings, there appears to be a missing starting bracket [ for the "ops" entry in the "initialState" object. I've attached an example: model.json

aadibiasi commented 5 months ago

Thank you Katherine for showing us this. We think we may have accidentally created this issue because it involves code we changed to fix the seg fault. I'll be looking into this!

aadibiasi commented 5 months ago

Hey Katherine! Would you mind sending over the .bngl or .xml that is causing the issue? I am having a hard time replicating the issue on my end. Also, what version of NFsim are you using?