search

RuleWorld / rulebender

Rule-Based Modeling and Simulation Gui
http://bionetgen.org
12 stars 7 forks source link

Windows Version - doesn't start - incorrect JDK/JRE #209

Closed EricGT closed 6 years ago

EricGT commented 6 years ago

When using RuleBender 2.2.1 installed from BioNetGen site for Windows 10 64-bit version various errors can occur related to the JRE/JDK installation.

If a JRE of version 9 or greater is used.

rulebender_error_001

An error has occurred. See the log file ...\RuleBender-workspace\.metadata\.log

RuleBender-workspace\.metadata\.log

java.version=9.0.1 java.vendor=Oracle Corporation BootLoader constants: OS=win32, ARCH=x86_64, WS=win32, NL=en_US Command-line arguments: -os win32 -ws win32 -arch x86_64 -consoleLog -data @noDefault

!ENTRY org.eclipse.osgi 4 0 2018-02-25 14:30:59.985 !MESSAGE Application error !STACK 1 java.lang.NoClassDefFoundError: org/w3c/dom/stylesheets/StyleSheet at org.eclipse.e4.ui.css.swt.internal.theme.ThemeEngineManager.getCSSSWTEngine(ThemeEngineManager.java:41) at org.eclipse.e4.ui.css.swt.internal.theme.ThemeEngineManager.getEngineForDisplay(ThemeEngineManager.java:30) at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.createThemeEngine(PartRenderingEngine.java:1428) at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.initializeStyling(PartRenderingEngine.java:1281) at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$9.run(PartRenderingEngine.java:1036) at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:332) at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1032) at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:148) at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:636) at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:332) at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:579) at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:150) at rulebender.Application.start(Application.java:87) at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:380) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:235) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.base/java.lang.reflect.Method.invoke(Unknown Source) at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:648) at org.eclipse.equinox.launcher.Main.basicRun(Main.java:603) at org.eclipse.equinox.launcher.Main.run(Main.java:1465) at org.eclipse.equinox.launcher.Main.main(Main.java:1438) Caused by: java.lang.ClassNotFoundException: org.w3c.dom.stylesheets.StyleSheet cannot be found by org.eclipse.e4.ui.css.core_0.10.100.v20140424-2042 at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:432) at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:345) at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:337) at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:160) at java.base/java.lang.ClassLoader.loadClass(Unknown Source) ... 26 more

If no JRE is installed.

rulebender_error_002

A Java Runtime Environment (JRE) or Java Development Kit (JDK) must be available in order to run RuleBender. No Java virtual machine ws found after searching the following location: C:...\RuleBender-2.2.1-win64\jre\bin\java.exe java.exe in your current PATH

If a JRE of version 7 or less is used.

rulebender_error_003

To run properly, RuleBender requires Java version 1.8. Currently our system is running 1.7.0_80. This may be sufficient for doing simulations, but the visualization tools likely will not function unless Java is upgraded. More information is available at bionetgent.org in the Download section.

EricGT commented 6 years ago

The solution to all three errors is to provide RuleBender 2.2.1 with Java SE Runtime Environment 8u161 (JRE)

Download re-8u161-windows-x64.tar.gz Uncompress the file. Copy the directory jre1.8.0_161 to RuleBender-2.2.1-win64 Rename directory jre1.8.0_161 to jre Start RuleBender

jrfaeder commented 6 years ago

Thanks for the post Eric! We will get the JRE into the next RB release so we don't have this problem in the future.