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RuleWorld / rulebender

Rule-Based Modeling and Simulation Gui
http://bionetgen.org
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Functions in Results Graphs #83

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
From Leonard: "Recently we added an option to BNG to output function values to 
the GDAT file.  We thought that by doing this we'd be able to plot the 
functions in RB.  However, this seems to not be the case.  We're guessing this 
is because the functions aren't listed in the "groups" block of the NET file. "

Original issue reported on code.google.com by AdamMatthewSmith on 6 Jul 2012 at 2:07

GoogleCodeExporter commented 9 years ago 
Went over this with LH. In .net file we could support a Functions observable 
type (besides Molecules/Species) and add generated functions to observables. 
Manually doing this causes the results viewer to show the observables. 
"Molecules" works but is not a good label. BNG may need to support the new .net 
observable type.

So, bottom line, this is a new BNG feature, but, RB could somehow treat 
molecules/species differently than functions in the display as desired.

Original comment by d...@danielpacker.org on 24 Jul 2012 at 1:45