RuleWorld / rulebender

Rule-Based Modeling and Simulation Gui
http://bionetgen.org
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Molecule Configuration Visualizer #91

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago
Basic idea is to be able to read any list of species graphs and show a 
corresponding, interactive graph.
It would be worthwhile to experiment with different ways of doing this 
including:

1) Graphviz.  Translate BNG species graphs into different kinds of .dot files.
2) Other graph visualization tools - there's a python library I know of called 
Networkx that might be useful as well.
3) Prefuse.  Currently, large species graphs for the TLBR model crash the 
speciesBrowser in RB, so some work needs to be done on making the prefuse vis. 
scalable.  Also the default layout needs to be modified.

Original issue reported on code.google.com by jrfae...@gmail.com on 24 Jul 2012 at 4:45

GoogleCodeExporter commented 9 years ago

Original comment by jrfae...@gmail.com on 24 Jul 2012 at 4:47

GoogleCodeExporter commented 9 years ago

Original comment by d...@danielpacker.org on 2 Aug 2012 at 9:48