Open RuolinHe opened 6 months ago
Recently (may April or May in 2024), we will update SIDERITE to cover new siderophores.
As of 2024-3-13, there are 52 new siderophores with unique structures after the first version of SIDERITE.
Here is the list of new siderophore names:
Aeruginaldehyde Aerugine Aeruginoic acid Aeruginol Avenic acid B C12 acylated desferrioxamine+200+200+30 C12 acylated desferrioxamine+200+30 C12 acylated desferrioxamine+30 Caribactin A Caribactin B Caribactin C Caribactin D Caribactin E Caribactin F Chlorodactyloferrin Dactyloferrin Dihydroaeruginoic acid Fulvivirgamide A2 Fulvivirgamide B2 Fulvivirgamide B3 Fulvivirgamide B4 Methyl 2-(2-hydroxyphenyl)-4,5-dihydrooxazole-4-carboxylate Methyl thiazostatin B Myxochelin B-succinate N,N′,N′-tris(S-2,3-dihydroxybenzoyl)-O-seryl-O-seryl methoxy serinate N,N′-bis(S-2,3-dihydroxybenzoyl)-O-seryl methoxy serinate Nobachelin A Nobachelin B Nobachelin C Pacifibactin-Ser Pulicatin A Pulicatin B Pulicatin C Pulicatin D Pulicatin E Pulicatin F Pulicatin G Pulicatin H Pulicatin I Pulicatin J Pyonitrin A Pyonitrin B Pyonitrin C Pyonitrin D Pyoverdine P482 Serratiochelin D Spoxazomicin E Streptochelin A Thermochelin Thiazostatin C Tistrellabactin A Tistrellabactin B
The number of SIDERITE records = 872 (last time) + 77 (new records) - 4 (4 duplication: NBRI16716A, Amonabactin T789, Amonabactin P750, Pacifibactin-Gly. See "Correct and update records" for more details.) = 945
The number of unique siderophore structures: 649 + 62 (new) - 4 ( 4 duplication: SID00046, SID00047, SID00068, SID00170) = 707
The number of Siderophore clusters: 25 - 1 (Cluster 5) + 2 (Cluster 5 and Cluster 26) = 26
SIDERITE_records_20240531.xlsx contains 945 siderophore records
SIDERITE_unique_structures_20240531.xlsx contains 707 unique siderophore structures
The same siderophore structures can be found in different species, leading to multiple records. Therefore, the number of siderophore records can exceed the number of unique siderophore structures.
They can be downloaded in zenodo: https://zenodo.org/doi/10.5281/zenodo.11441109
Note: The pictures of siderophore structures in "structure" column are no longer updated.
Original Cluster 5 (including SID00082, SID00141, SID00602, SID00603, SID00604, SID00605, SID00606, SID00607, SID00632, SID00633, SID00634, SID00635, SID00636, SID00637)is merged into Cluster 1.
New Cluster 5 (including SID00694, SID00695, SID00692, SID00691, SID00690, SID00689, SID00652, SID00650, SID00699, SID00698, SID00700, SID00697) and Cluster 26 (including SID00671) is added.
As of 2024-5-31, there are 62 new siderophores with unique structures after the last version of SIDERITE.
Here is the list of new siderophore names:
Aeruginaldehyde
Aerugine
Aeruginol
Arthrobactin A
Avenic acid B
C12 acylated desferrioxamine+200+200+30
C12 acylated desferrioxamine+200+30
C12 acylated desferrioxamine+30
Caribactin A
Caribactin B
Caribactin C
Caribactin D
Caribactin E
Caribactin F
Chlorodactyloferrin
Dactyloferrin
Desoxy-desferrioxamine B
Desoxy-desferrioxamine D1
Didesoxy-desferrioxamine B
Didesoxy-desferrioxamine D1
Dihydroaeruginoic acid
Ethylenediamine-disuccinate
Fulvivirgamide A2
Fulvivirgamide B2
Fulvivirgamide B3
Fulvivirgamide B4
Megalochelin
Methyl 2-(2-hydroxyphenyl)-4,5-dihydrooxazole-4-carboxylate
Methyl thiazostatin B
Myxochelin B-succinate
N,N′,N′-tris(S-2,3-dihydroxybenzoyl)-O-seryl-O-seryl methoxy serinate
N,N′-bis(S-2,3-dihydroxybenzoyl)-O-seryl methoxy serinate
N-deoxy arthrobactin A
Nobachelin A
Nobachelin B
Nobachelin C
Pacifibactin-Ser
Pulicatin A
Pulicatin B
Pulicatin C
Pulicatin D
Pulicatin E
Pulicatin F
Pulicatin G
Pulicatin H
Pulicatin I
Pulicatin J
Pyonitrin A
Pyonitrin B
Pyonitrin C
Pyonitrin D
Pyoverdine P482
Serratiochelin D
Spoxazomicin E
Streptochelin A
Thermochelin
Thiazostatin C
Tistrellabactin A
Tistrellabactin B
Variochelin C
Variochelin D
Variochelin E
In this conversation, SIDERITE team will record the update of SIDERITE database.
Announce new siderophores will be added into database in advance.
The content is same with Google Group of SIDERITE.