Speed up CRISPR stats calculation

Russel88 / CRISPRCasTyper

CCTyper: Automatic detection and subtyping of CRISPR-Cas operons

https://typer.crispr.dk

MIT License

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Speed up CRISPR stats calculation #11

Closed Russel88 closed 3 years ago

Russel88 commented 3 years ago

Long CRISPRs take time to process, because each pair of both spacers and repeats are aligned to calculate the average identity of repeats and spacers. It should be sufficient to sample a subset of the repeats/spacers to estimate the identity. Then add a CLI argument to toggle exact versus approximate identity estimation.

Russel88 commented 3 years ago

Now implemented in development version