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Russel88 / CRISPRCasTyper

CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
https://typer.crispr.dk
MIT License
89 stars 16 forks source link

FileNotFoundError: blast.tab #30

Closed TianyiChang closed 1 year ago

TianyiChang commented 2 years ago

Hi there

I was wondering if you know what caused this issue, "FileNotFoundError: [Errno 2] No such file or directory: DIR/blast.tab"?

Thanks!

Russel88 commented 2 years ago

Hi TianyiChang

It looks like a bug that appears when no repeat matches any sequences in the input. You can get around it by adding the --skip_blast argument when running cctyper. I will fix it in the next version.

Thank you for reporting!

TianyiChang commented 2 years ago

I see. Thanks a lot!

​

On Aug 19 2022, at 6:25 AM, Jakob Russel @.***> wrote:

Hi TianyiChang

It looks like a bug that appears when no repeat matches any sequences in the input. You can get around it by adding the --skip_blast argument when running cctyper. I will fix it in the next version.

Thank you for reporting!

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Russel88 commented 2 years ago

Hi TianyiChang

I cannot reproduce that error. On my system a blast.tab file is always produced, even without matches. Can you provide information on the version of cctyper and dependecies, and maybe a small example file which produce an error

Best, Jakob