SUBWORKFLOW: Profile fasta file

[DLBPointon]

Subworkflow to profile your input:

• N50
• N90
• L50
• GC content (per scaffold and globally)
• Raw counts of G,C, T, A
• Scaffold length and size
• Gap count and summary (avg gap length across scaffolds and globally)

Compare to GFastats <-- Not to compete, but for fun, GFastats does loads of things.

Marked as medium as it may struggle with larger fasta file (NEWT 30gb!)

Viscus Album https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_963277665.1/

[figueroakl]

Add notice for fasta files with >2GB, related to submission to public archives

[DLBPointon]

Hi Kat, I've just run a BGA session with Giulio on GFastats, in case it is helpful. https://www.youtube.com/watch?v=-4O3GwK_tls