RyanWangZf / BioBridge

ICLR'24 | BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphs
MIT License
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Question about metrics and settings of cross-modality retrieval tasks. #5

Open rmanbio opened 3 months ago

rmanbio commented 3 months ago

Dear Author,

Thanks for sharing your wonderful work. I currently want to compare the cross-modality retrieval tasks with the Biobridge. Based on my understanding, it is a knowledge graph completion task with the metrics of MRR, Hit@k. However, the code in eval_bind.py only computes the metrics of recall, NDCG, and F1. Could you help share the code or discuss the settings and metric calculation for the results reported in Table 1?