Automatic requirements setup

[simonmarchant]

This pull fixes #60 by replacing setup.py with requirements.txt. It installs pints & runs fine for me on a clean conda environment.

[simonmarchant]

This pull fixes #60 by replacing setup.py with requirements.txt. It installs pints & runs fine for me on a clean conda environment.

OH WAIT no it doesn't! Hold your horses, I will fix this.

[martinjrobins]

hi @simonmarchant, I tried this using a python3 venv, but it failed with the following:

Obtaining file:///home/mrobins/git/PKPD
Requirement already satisfied: cma>=2 in ./env/lib/python3.6/site-packages (from PKPD==0.0.2.dev0)
Requirement already satisfied: matplotlib>=1.5 in ./env/lib/python3.6/site-packages (from PKPD==0.0.2.dev0)
Requirement already satisfied: myokit>=1.29 in ./env/lib/python3.6/site-packages (from PKPD==0.0.2.dev0)
Requirement already satisfied: numpy>=1.8 in ./env/lib/python3.6/site-packages (from PKPD==0.0.2.dev0)
Collecting pints@ git+git://github.com/pints-team/pints.git#egg=pints (from PKPD==0.0.2.dev0)
Exception:
Traceback (most recent call last):
  File "/home/mrobins/git/PKPD/env/lib/python3.6/site-packages/pip/basecommand.py", line 215, in main
    status = self.run(options, args)
  File "/home/mrobins/git/PKPD/env/lib/python3.6/site-packages/pip/commands/install.py", line 353, in run
    wb.build(autobuilding=True)
  File "/home/mrobins/git/PKPD/env/lib/python3.6/site-packages/pip/wheel.py", line 749, in build
    self.requirement_set.prepare_files(self.finder)
  File "/home/mrobins/git/PKPD/env/lib/python3.6/site-packages/pip/req/req_set.py", line 380, in prepare_files
    ignore_dependencies=self.ignore_dependencies))
  File "/home/mrobins/git/PKPD/env/lib/python3.6/site-packages/pip/req/req_set.py", line 554, in _prepare_file
    require_hashes
  File "/home/mrobins/git/PKPD/env/lib/python3.6/site-packages/pip/req/req_install.py", line 278, in populate_link
    self.link = finder.find_requirement(self, upgrade)
  File "/home/mrobins/git/PKPD/env/lib/python3.6/site-packages/pip/index.py", line 465, in find_requirement
    all_candidates = self.find_all_candidates(req.name)
  File "/home/mrobins/git/PKPD/env/lib/python3.6/site-packages/pip/index.py", line 423, in find_all_candidates
    for page in self._get_pages(url_locations, project_name):
  File "/home/mrobins/git/PKPD/env/lib/python3.6/site-packages/pip/index.py", line 568, in _get_pages
    page = self._get_page(location)
  File "/home/mrobins/git/PKPD/env/lib/python3.6/site-packages/pip/index.py", line 683, in _get_page
    return HTMLPage.get_page(link, session=self.session)
  File "/home/mrobins/git/PKPD/env/lib/python3.6/site-packages/pip/index.py", line 795, in get_page
    resp.raise_for_status()
  File "/home/mrobins/git/PKPD/env/share/python-wheels/requests-2.18.4-py2.py3-none-any.whl/requests/models.py", line 935, in raise_for_status
    raise HTTPError(http_error_msg, response=self)
requests.exceptions.HTTPError: 404 Client Error: Not Found for url: https://pypi.org/simple/pints/

[simonmarchant]

agreed in person