dbNSFP4.8 - regenerate w/raw pathogenicity score columns

SACGF / variantgrid

VariantGrid public repo

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dbNSFP4.8 - regenerate w/raw pathogenicity score columns #1131

Open davmlaw opened 3 months ago

davmlaw commented 3 months ago

Might as well use new release

https://sites.google.com/site/jpopgen/dbNSFP

davmlaw commented 3 months ago

The new fields I'm grabbing are:

CADD_raw, REVEL_score, BayesDel_noAF_score, ClinPred_score, ClinPred_pred, VEST4_score, MetaLR_score, MetaLR_pred, AlphaMissense_score, AlphaMissense_pred

We'll probably use REVEL plugin eventually but can't hurt leaving it in for now

Running on screen in vg test 3 at /data/annotation/incoming/dbnsfp

davmlaw commented 3 months ago

I found I added MutPred on FromeRd machine and didn't check it in. Not sure if it made it to the test server. May need to re-generate

davmlaw commented 1 month ago

SA Path also would like Varity