Variant details page - pheno and allele frequency graphs

SACGF / variantgrid

VariantGrid public repo

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Variant details page - pheno and allele frequency graphs #27

Open davmlaw opened 3 years ago

davmlaw commented 3 years ago

allele frequency histogram should be horizontal and against the other one - lined up as a summary of the other one
phenotype bar graph add second X axis legend and show frequency as a dot or something - not just count (keep track of total for HPO term then calculate freq)

sksmi commented 3 years ago

Phenotype bar graph shouldn't include counts from samples that don't contain the variant AD = 0 , AF = 0. Not sure how this should be defined. Exclude hom ref? Use AD/AF cutoff to remove somatic variants (some variants called HET will be low AF somatic)?