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SACGF / variantgrid

VariantGrid public repo
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Constrained coding regions #638

Open davmlaw opened 2 years ago

davmlaw commented 2 years ago

https://www.nature.com/articles/s41588-018-0294-6.epdf?author_access_token=N8RkVYcavtplcSSE2KJkNdRgN0jAjWel9jnR3ZoTv0OG-o3UTB17cpoBs8B6XMBCl-5E0ZvpOii0iPl_hRSMGjWfkG4em7gjy95eV4bkTb0AF-E_dj3obeJfaadTja3aj9hUh1xk_BIztWgJScFx8w%3D%3D

We have this as a BED - but that requires an extra step - perhaps we should add it to the annotations?

davmlaw commented 2 years ago

There's only GRCh37 but not GRCh38

Issue was raised about it in 2020 only issue in repo dev says he need to do QC, looks like it won't be done