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SACGF / variantgrid

VariantGrid public repo
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VariantTranscriptAnnotation - subtly show errors with overlapping transcripts #844

Open davmlaw opened 1 year ago

davmlaw commented 1 year ago

We show a list of transcripts to select from on the classification and variant page.

Some of these will fail as they are not valid c.HGVS coordinates (off transcript etc)

They may have worked in PyHGVS but now won't in Biocommons hgvs

We currently swallow any errors and display "?" but we should perhaps say why they can't do it (coords off etc)

davmlaw commented 1 year ago

Can't really do this easily as we're using combo hgvs converter which swallows exceptions

Need to either enable die_on_error first (or switch to just biocommons)

It might also be a good idea to have a toggle for hiding the ones that don't make a proper HGVS