SAMtoBAM MUMandCo issues

SAMtoBAM / MUMandCo

MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation

GNU General Public License v3.0

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issues

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BLAST Database error: Error: File [reference] not found.

#35 askleppe opened 7 months ago
1
About how much longer the running time will be increased when running with the -b parameter

#34 qdu-beep opened 7 months ago
0
No errors were reported, and the program stopped after running for a while

#33 zzzzzzzy7 opened 11 months ago
1
MUM&Co thread and optimisation issue

#32 OZTaekOppa opened 1 year ago
1
Weird translocation results

#31 aminakur opened 1 year ago
1
Excesively long execution time

#30 elcortegano opened 1 year ago
3
Update and rename mumandco_v3.8.sh to mumandco_v3.9.sh

#29 VLoegler opened 1 year ago
0
VCF header format error

#28 VLoegler opened 1 year ago
0
problems in inversion

#27 biomichal closed 2 years ago
0
The insertion problem in the final output

#26 biomichal opened 2 years ago
7
awk: cmd. line:1: fatal: division by zero attempted

#25 aminakur opened 2 years ago
9
Aligning different size genomes

#24 aminakur closed 2 years ago
1
support for other alingment formats

#23 aseetharam closed 2 years ago
1
MUMandCO v3.8, aborted using example files

#22 biofcallejas closed 2 years ago
1
What does it mean 'imprecise' calls for the VCF

#21 elcortegano closed 2 years ago
2
--threads has no default value

#20 hhuili closed 2 years ago
1
Make hardier

#19 schorlton opened 2 years ago
2
Return to 'multiple threads?' closed issue

#18 davidaray closed 3 years ago
5
syntax error near unexpected token `newline'

#17 WenChangYu closed 3 years ago
6
Total duplications and inversions between the homologous chromosomes of an haplotype-phased genome assembly

#16 uceleste opened 3 years ago
7
awk only divides when NR is not NULL

#15 elcortegano opened 3 years ago
0
awk: cmd. line:1: fatal: division by zero attempted

#14 elcortegano closed 3 years ago
4
Check insertion and deletion blast files

#13 elcortegano opened 3 years ago
0
multiple threads?

#12 davidaray closed 3 years ago
7
SV call from multiple genomes comparison

#11 rthapa1 closed 3 years ago
8
How to understanding the inversion result?

#10 luca-Wang closed 3 years ago
3
No insertions but many deletions found

#9 ASLeonard closed 4 years ago
7
What does the label 'complicated' mean?

#8 Leona123151 closed 4 years ago
2
Variable number of variants found over runs

#7 elcortegano closed 4 years ago
2
Error finding translocation fragments

#6 elcortegano closed 4 years ago
2
Size of deletions

#5 linusdsv opened 4 years ago
6
Detection of ~5kb insertions/deletions

#4 MFSeidl closed 4 years ago
5
Can MUMandCo detect intrachromosomal translocation

#3 liufy11 closed 3 years ago
2
Analyzing short read assemblies

#2 koushik1989 closed 3 years ago
2
The genome used to be compared can only include one chromosome

#1 liufy1 closed 3 years ago
2