Closed Timothysit closed 2 years ago
This was caused by Params.network_plot_cmap_bounds
not being accessed properly via z2name
, as a temporary (hard-coded) solution I have created a correct mapping between the provided network metric colormap axis label and the cmap bound value to access, though in the future it will be better to have the user specify the key to use to access the theoretical bounds (so the user can freely change the network colormap axis label without changing the mapping object).
See: 3095e1c
Issue
Currently, when running step 4 - network activity of the pipeline, some plots are missing in: 4A_IndividualNetworkAnalysis/[genotype]/[culture_name]/[lag_value]/ only plots 1, 2, 8, 9 and 10 were generated, but not 3 - 7.
Proposed solution
This is likely to be caused by try/catch statements in ExtractNetMetOrganoid, which skips over these plots when an error is encountered. Please remove those and debug