Pipeline error at step 4B

[XuelinWangTvT]

Hello, I encountered another error when running the pipeline around step 4B. Could you please help me to take a look at it? Thank you so much! Also, David says he sometimes encounter this issue as well.

[Timothysit]

Hi Xue Lin, can you let me know which lags are you running the with? It may be because currently TrialLandscapeDensity assumes a lag of 15 ms

[XuelinWangTvT]

Hello Tim, I'm using a lag of 15ms

[Timothysit]

Okay, the next thing to check is whether you are running step 4B from previously analyzed data, or did you run through all the steps? I wonder whether it is because in the prior analysis the participation coefficient (PC) (or 15 ms lag) were not calculated

[XuelinWangTvT]

I started running pipeline from step 3 today, so running from previously analyzed data.

[Timothysit]

okay, in that case can you load up an example of a previously analyzed data and see if (1) a 15 ms lag was used in that data, and (2) whether participation coefficient was calculated. Basically, loading up a matlab file containing the variable NetMet and checking whether you see the field adjM15mslag.PC, or whether you do not see it / see something else

[XuelinWangTvT]

Okay, thank you so much Tim!

[Timothysit]

The latest version of the pipeline runs density landscape across all lag used in earlier steps of the pipeline, so this 15 ms lag assumption is no longer needed.