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SATAY-LL / LaanLab-SATAY-DataAnalysis

This contains codes and workflows for data analysis regarding SATAY experiments.
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Create visual and numerical comparison for two datasets. #11

Closed Gregory94 closed 4 years ago

Gregory94 commented 4 years ago

To improve the processing of sequencing data, some python scripts need to be developed that allows for quick comparison of two datasets. This might show differences in the data processing done by me and by others. I want to use this for improving the processing of the sequencing data.

Gregory94 commented 4 years ago

I altered an existing bar plot for showing the number of transposons per region in each chromosome. I changed this now such that two datasets are shown together including the absolute difference between the two. This plot is created in TransposonRead_Profile_Compare.py. Cerevisiae_Michel2017_WT2_Compare_chromIX

I also made a text file where, for all chromosomes, some values and statistics are determined for two datasets. This allows for a more numerical comparison of the datasets. currently some basic statistics are determined, but this can easily be extended. This is made in statistics_perchromosome_Compare.py.

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