Open leilaicruz opened 3 years ago
This model describes a population fitness that obeys a logistic expression due to the scarcity of resources on the environment that effectively sets a limit on the growth rate of the entire population.
Here, one of the assumptions will be that :
np.log(N/(1-N/K))/T
where N is the N=['number_of_read_per_gene']/(['number_of_transposon_per_gene']-1)
, K is the so called carrying capacity , which is the maximum N the population can achieve , in this case will be the total_reads/total_tn
from the population , and T is the time interval of this process that will be 90 hours (reseeding time). Look up here for the solution of the logistic expressionBem1
how in the dnrp1
can manage to grow from the 60 hours in the reseeding while for the WT it can not. This is somehow what we expect for the case of Bem1. The same can be plotted for Bem3
that we know that in dnrp1
it is a bit slower than in the WT
.
Lets put here different ways you have tried out to get fitness from satay data