SBC-Utrecht / PyTom

PyTom software for cryo-tomogram processing
GNU General Public License v2.0
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agnostic.io.read() does not correctly convert to pytom_volume #27

Open McHaillet opened 2 years ago

McHaillet commented 2 years ago

Expected behaviour: reading files with files via agnostic.io and providing the option ndarray=False, should read the files as a numpy array but then convert it to a pytom_volume for the return

Observed: The pytom_volume is returned with a correct shape, but while using an image stack read this way in subtomogram reconstruction the backprojection did not work. Iteration over the particle stopped, but i did not get an error message. I dont fully know what happened, but likely the projections have nonsense numbers in them.