fix for development mode install - Githubissues

SBC-Utrecht / PyTomPrivate

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fix for development mode install #129

Closed McHaillet closed 1 year ago

McHaillet commented 1 year ago

Made installation in editable mode functional

some simplifications to setup.py and removed a redundancy
added class for the custom develop installation
had to manually make symbolic links from miniconda env bin to the pytom clone bin
- documented the reasons for this in setup.py, currently needed to run gpu scripts
ran into some assertion errors, apparently assertions are always tested in dev mode
- some of the assertions were no longer valid and had to be updated (hence the changes)

pytom can now be installed with: pip install --editable . --prefix $CONDA_PREFIX