add check on tomo mask shape - Githubissues

SBC-Utrecht / pytom-match-pick

GPU-accelerated template matching for cryo-ET

https://sbc-utrecht.github.io/pytom-match-pick/

GNU General Public License v2.0

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add check on tomo mask shape #210

Closed sroet closed 3 months ago

sroet commented 3 months ago

closes #194 (the part that the tm-job should error out if the mask is the wrong size)

Also adds the same check to the extraction job

[X] add checks to catch mismatch between tomo mask and tomogram in tmjob
[x] as above for extraction
[x] alter tooltips to mention number of pixels
[x] add tests

github-actions[bot] commented 3 months ago

File	Coverage		Missing
All files	`87%`	:white_check_mark:
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src/pytom_tm/entry_points.py	`79%`	:x:	`28` `111-128` `231-276` `379-398` `531-549` `996-1007`
src/pytom_tm/extract.py	`76%`	:x:	`122-133` `198-205` `247-252` `344-362`
src/pytom_tm/io.py	`80%`	:x:	`19` `40` `58` `76` `88` `108-115` `131-135` `143` `150` `161` `168` `214-216` `280` `316-319` `420-428` `453`
src/pytom_tm/mask.py	`80%`	:x:	`72` `90` `100-101`
src/pytom_tm/parallel.py	`89%`	:white_check_mark:	`14-15` `89` `100-101` `107` `170`
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src/pytom_tm/utils.py	`78%`	:x:	`17-19`
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Minimum allowed coverage is 86%

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