SBC-Utrecht / pytom-match-pick

GPU-accelerated template matching for cryo-ET
https://sbc-utrecht.github.io/pytom-match-pick/
GNU General Public License v2.0
29 stars 9 forks source link

deal with new ruff version and next try for tutorial-test.yml #224

Closed sroet closed 3 months ago

sroet commented 3 months ago

this is the next try at testing the tutorial, will now only trigger on pushes to main. (will have to merged before it triggers)

might solve #148

Also tries to fix the ruff issues with the added ipynb (a new ruff version has released with ipynb linting enabled) and updates the pre-commit hook

Also updates minimal coverage to 87%

github-actions[bot] commented 3 months ago

File Coverage Missing
All files 88% :white_check_mark:
src/pytom_tm/correlation.py 85% :x: 98-99 131
src/pytom_tm/entry_points.py 79% :x: 28 113-130 235-280 385-404 540-558 1038-1049
src/pytom_tm/extract.py 76% :x: 127-138 205-212 256-261 354-372
src/pytom_tm/io.py 81% :x: 20 40 58 76 89 110-116 133-137 144 150 162 169 216-218 288 434-442 467
src/pytom_tm/mask.py 80% :x: 76 94 104-105
src/pytom_tm/parallel.py 89% :white_check_mark: 14-15 93 104-105 111 176
src/pytom_tm/plotting.py 16% :x: 19-21 24-31 35-43 47-50 53-69 72-73 76-77 97-102 118-126 132-149 164-172 176-193 197-205 209-216 222 228 233 247-397
src/pytom_tm/tmjob.py 97% :white_check_mark: 372-373 389 399-404 483 611 660
src/pytom_tm/utils.py 78% :x: 18-20
src/pytom_tm/weights.py 96% :white_check_mark: 59 314-318 325 535 540 545

Minimum allowed coverage is 86%

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