Get tutorial-tests.yml working

[sroet]

Alright, I am rerunning this job only on this branch until I get it working

closes #148

[github-actions[bot]]

File	Coverage		Missing
All files	88%	:white_check_mark:
src/pytom_tm/correlation.py	85%	:x:	98-99 131
src/pytom_tm/entry_points.py	79%	:x:	28 113-130 235-280 385-404 540-558 1038-1049
src/pytom_tm/extract.py	76%	:x:	127-138 205-212 256-261 354-372
src/pytom_tm/io.py	81%	:x:	20 40 58 76 89 110-116 133-137 144 150 162 169 216-218 288 434-442 467
src/pytom_tm/mask.py	80%	:x:	76 94 104-105
src/pytom_tm/parallel.py	89%	:white_check_mark:	14-15 93 104-105 111 176
src/pytom_tm/plotting.py	16%	:x:	19-21 24-31 35-43 47-50 53-69 72-73 76-77 97-102 118-126 132-149 164-172 176-193 197-205 209-216 222 228 233 247-397
src/pytom_tm/tmjob.py	97%	:white_check_mark:	372-373 389 399-404 483 611 660
src/pytom_tm/utils.py	78%	:x:	18-20
src/pytom_tm/weights.py	96%	:white_check_mark:	59 314-318 325 535 540 545

Minimum allowed coverage is 87%

Generated by :monkey: cobertura-action against dee2f0a0fdeb06ae7d122ab329c4cff159731260

[sroet]

@McHaillet This finally works! It runs in 101 min, and can be seen here: https://github.com/SBC-Utrecht/pytom-match-pick/actions/runs/10425169098/job/28875465809 (commit 4ba5eda, which failed on ruff stuff in the regular unitests)

With that runtime, it might be worthwhile to actually pip install cupy, what do you think?

[sroet]

It also already found the first error in the tutorial :sweat_smile:

[McHaillet]

It also already found the first error in the tutorial 😅

Nice! What was the error?

[sroet]

It also already found the first error in the tutorial 😅

Nice! What was the error?

the file you get from emdb is called emd_2938.map instead of emd_2938.mrc (was mentioned that way in the file structure)