Add bins option to both the tophat and extraction plot - Githubissues

SBC-Utrecht / pytom-match-pick

GPU-accelerated template matching for cryo-ET

https://sbc-utrecht.github.io/pytom-match-pick/

GNU General Public License v2.0

29 stars 9 forks source link

Add bins option to both the tophat and extraction plot #227

Closed sroet closed 2 months ago

sroet commented 3 months ago

closes #113

Also:

rewrites the tmjob tests to use a temp directory
updates minimal coverage to 88%
updates version to 0.7.3

Parts:

[X] add options to code
[x] add options to the entry point(s)
[x] add tests

github-actions[bot] commented 3 months ago

File	Coverage		Missing
All files	`89%`	:white_check_mark:
src/pytom_tm/correlation.py	`85%`	:x:	`98-99` `131`
src/pytom_tm/entry_points.py	`79%`	:x:	`28` `113-130` `235-280` `385-404` `557-577` `1057-1068`
src/pytom_tm/extract.py	`97%`	:white_check_mark:	`265-270`
src/pytom_tm/io.py	`81%`	:x:	`20` `40` `58` `76` `89` `110-116` `133-137` `144` `150` `162` `169` `216-218` `288` `434-442` `467`
src/pytom_tm/mask.py	`80%`	:x:	`76` `94` `104-105`
src/pytom_tm/parallel.py	`89%`	:white_check_mark:	`14-15` `93` `104-105` `111` `176`
src/pytom_tm/plotting.py	`16%`	:x:	`19-21` `24-31` `35-43` `47-50` `53-69` `72-73` `76-77` `97-102` `118-126` `132-149` `164-172` `176-193` `197-205` `209-216` `222` `228` `233` `247-397`
src/pytom_tm/tmjob.py	`97%`	:white_check_mark:	`372-373` `389` `399-404` `483` `611` `660`
src/pytom_tm/utils.py	`78%`	:x:	`18-20`
src/pytom_tm/weights.py	`96%`	:white_check_mark:	`59` `314-318` `325` `535` `540` `545`

Minimum allowed coverage is 87%

Generated by :monkey: cobertura-action against dc7ce64b84d2d70b0a55cb855f1b82362a49e6b1