SBC-Utrecht / pytom-match-pick

GPU-accelerated template matching for cryo-ET
https://sbc-utrecht.github.io/pytom-match-pick/
GNU General Public License v2.0
29 stars 9 forks source link

Drop py 39 and upgrade #230

Closed sroet closed 1 month ago

sroet commented 2 months ago

following SPEC0/NEP29 we should probably drop python 3.9.

Also does some upgrading by running ruff check --extend-select=UP and either doing the auto-fix or manually fixing the last couple

github-actions[bot] commented 2 months ago

File Coverage Missing
All files 89% :white_check_mark:
src/pytom_tm/correlation.py 85% :x: 97-98 130
src/pytom_tm/entry_points.py 79% :x: 29 114-131 236-281 386-405 558-578 1059-1070
src/pytom_tm/extract.py 97% :white_check_mark: 264-269
src/pytom_tm/io.py 82% :x: 19 39 55 71 84 103-109 126-130 137 143 180 185 232-234 304 450-458 483
src/pytom_tm/mask.py 80% :x: 75 93 103-104
src/pytom_tm/parallel.py 89% :white_check_mark: 14-15 93 104-105 111 176
src/pytom_tm/plotting.py 16% :x: 19-21 24-31 35-43 47-50 53-69 72-73 76-77 97-102 118-126 132-149 164-172 176-193 197-205 209-216 222 228 233 247-397
src/pytom_tm/tmjob.py 97% :white_check_mark: 371-372 388 398-403 482 610 659
src/pytom_tm/utils.py 78% :x: 18-20
src/pytom_tm/weights.py 96% :white_check_mark: 58 313-317 324 534 539 544

Minimum allowed coverage is 88%

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