error running example on osx

SBIMB / StellarPGx

Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.

MIT License

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error running example on osx #2

Closed mathob closed 3 years ago

mathob commented 3 years ago

Please can you help me understand this error


~/git/StellarPGx: nextflow -v
nextflow version 18.10.1.5003
~/git/StellarPGx: singularity --version
singularity version 3.3.0-rc.1.658.g7427b73f1.dirty
~/git/StellarPGx: nextflow run main.nf -profile standard,test
N E X T F L O W  ~  version 18.10.1
Launching `main.nf` [sleepy_visvesvaraya] - revision: ab68701493
ERROR ~ No such variable: ref_dir

 -- Check script 'main.nf' at line: 350 or see '.nextflow.log' file for more details

mathob commented 3 years ago

updating nextflow to 21.04.1.5556 fixed this problem