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The BiGG Models website server
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Ensebl (ENSG) and UniProt annotation missing from RECON3D #288

Open matthiaskoenig opened 6 years ago

matthiaskoenig commented 6 years ago

The ENSG ensemble identifiers as well as all the mappings to uniprot are missing from the SBML of the Recon3D model. These are both provided in the original publication and crucial to work with the model. For instance the ENSG identifiers are used as identifiers for the gene associations. Could the ENSG annotations to the geneProducts as well as the uniprot annotations be added.

zakandrewking commented 6 years ago

This will require some enhancements to BiGG to track the extra data. In the meantime, we recommend using the full versions of Recon3D at http://vmh.life.

We will continue working to get the versions in each database up to speed with each other