I worked a bit with the bigg database in the last few days.
I found some issues in the synonym table with most of them easy to fix (see an attached log of all issues in the bigg synonym table). This is a duplicate (but more comprehensive) of #340, #331, #275, #260
A full set of the required fixes here (WARNING can be fixed, ERROR no solution possible right now)
bigg-v1.5-mapping.log
This includes:
adding reactome prefixes
kegg glycans belong in kegg.glycan
some rhea, sabiork, kegg.reaction have incorrect #1 or #2 endings, probably some software or curation bug somewhere
creating correct ec-code codes (things like 1.2.1 -> 1.2.1.-)
there seem to be some duplicates in the ec codes (?!)
In addition some namespaces are incorrect in the data_source table
I worked a bit with the bigg database in the last few days. I found some issues in the synonym table with most of them easy to fix (see an attached log of all issues in the bigg synonym table). This is a duplicate (but more comprehensive) of #340, #331, #275, #260
A full set of the required fixes here (WARNING can be fixed, ERROR no solution possible right now) bigg-v1.5-mapping.log This includes:
#1
or#2
endings, probably some software or curation bug somewhereIn addition some namespaces are incorrect in the
data_source
tablewith corresponding update of the url prefixes required.
Best Matthias