newlines in two metabolite records

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newlines in two metabolite records #359

Open mostueve opened 4 years ago

mostueve commented 4 years ago

While reading in the metabolite flatfile, I ran accross an error in my setup since there are two newlines where there should be tabs:

Line 6378 M01870_g M01870 >"\n"< (GlcNAc)7 (Man)3 (Asn)1 Recon3D M01870; M01870[g]

Line 12959 M01870_e M01870 >"\n"< (GlcNAc)7 (Man)3 (Asn)1 Recon3D M01870; M01870[e]

Cheers, Moritz

smoretti commented 4 years ago

This happens also for LTA_ala

mostueve commented 4 years ago

I am also under the impression that this appears "at random" meaning the lines and the number of lines affected are not always the same. Could it be due to wget usage? @smoretti , how did you fetch the files?

smoretti commented 4 years ago

I fetch it with WWW::Mechanize