Open smoretti opened 4 years ago
This most likely stems from ModelPolisher currently not being used to polish the models, due to issues with the latest release, as both the listOfFluxObjectives and refseq_ issue should be handled by it. I am currently working on some remaining issues with regard to annotation and performance and adding thorough testing to at least the core parts so that it becomes usable once again.
Thanks Waiting for your fixes
Any news for this fix?
Currently fixing small issues still existing with ModelPolisher and running polished Models through the Validator to check for further issues. If everything goes well, we could have a ModelPolisher release tomorrow and then the BiGG Models team can decide, if they want to use it once again in its current state.
The refseq_* annotations listed cannot be resolved, so they will be removed, if you run the model through ModelPolisher.
Hi
Several BiGG models are invalid in SBML format:
"listOfFluxObjectives cannot be empty" e.g. iMM1415, iSynCJ816, iAT_PLT_636, iRC1080 Some models have no objective functions (see #333), but other like iMM1415 had one before.
rdf:resource URI containing unsafe characters, complexifying interpretation (see https://www.w3.org/Addressing/URL/4_URI_Recommentations.html) e.g. iJN678, Recon3D, iAB_RBC_283, iCN900 Some models contain spaces in the sbml:annotation rdf:resource URI:
Thanks