Closed draeger closed 9 years ago
old id
should be gone now@draeger says: "Only for Ensembl there seems a solution, but Nick says that if we do know a particular group (such as fungi, bacteria, etc), we can try the general ensembl entry: http://www.ebi.ac.uk/miriam/cura/collections/MIR:00000003 (http://identifiers.org/ensembl/). However, it might be difficult to figure out to which group some model belongs. We do have the taxon id and I could query the lineage of the taxon and see what it is. Would there be an easier way? Or should we just use the generic ensemble catalog (which might potentially not cover everything)?
IMGT/GENE-DB is not possible to link to, as they use multiple identifiers as far as I can see, which are organism specific. eg http://www.imgt.org/genedb/GENElect?query=6.1+IGHV1-2&species=Homo+sapiens&IMGTlabel=FR1-IMGT (6.1, IGHVV1, Homo sapiens and FR1-IMGT would all have to be parameters). there is more documentation here: http://www.imgt.org/genedb/doc#directlinksgene
We need to provide more information about what the remaining resources are:
SEED should be accessible here: http://seed-viewer.theseed.org/
And SEED compounds can be accessed with this url: http://seed-viewer.theseed.org/seedviewer.cgi?page=CompoundViewer&compound=[SEED id]
UPA maps to the OBIWarehouse: http://www.grenoble.prabi.fr/obiwarehouse
I'm not sure about the others, MIM, PSEUDO. I'll take a look when I get a chance.
See #109 for discussion of GeneID and GI.
SEED seems much faster here: http://rast.nmpdr.org/seedviewer.cgi
The following resources from the data_source table are difficult to map to MIRIAM resources: