Intuitive coloring of protein structures

SBRG / ssbio

A Python framework for structural systems biology

http://ssbio.readthedocs.io/en/latest/

MIT License

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Intuitive coloring of protein structures #12

Open nmih opened 7 years ago

nmih commented 7 years ago

Protein structures in NGLview could be colored by their quality, eg. red for homology models and silver for experimental models. This gives a quick idea on the quality of information being presented. Other ideas

"figure legend" type of thing displaying quality information (c-score, basic PDB quality)
running QMEAN for all structures and reporting quality this way
coloring certain residues based on quality (b-factor)

nmih commented 7 years ago

Also see: http://www.rcsb.org/pdb/news.do?year=2016&article=57e30aee90f5613003407f08&feature=true - coloring by quality metrics