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SBU-BMI / quip_distro

BSD 3-Clause "New" or "Revised" License
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convert output to json #228

Closed tdiprima closed 6 years ago

tdiprima commented 6 years ago

Example files:

prediction-TCGA-93-A4JO-01Z-00-DX1.314C53B6-603C-402B-8CF7-E3CE851A0A0F
prediction-TCGA-93-A4JO-01Z-00-DX1.314C53B6-603C-402B-8CF7-E3CE851A0A0F.low_res

Example data:

693 693 0.027490677312 0.001889
693 891 0.0274593755603 0.002427
693 1088 0.027459345758 0.002427
tdiprima commented 6 years ago

Code:

  1. u24_lymphocyte/gen_json_multipleheat.py
  2. u24_lymphocyte/heatmap_gen/gen_all_json.sh
jbalsamo commented 6 years ago

Le Took care of generating the files with scrips he had. They should be incorporated into the workflow. I will close this for now and if it is an immediate issue we can reopen it.